rs260800350 SNP Detail

Summary

• ID
  rs260800350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTGTAC TTTCCTAATG
  GGTAGTTTAA TTTTGTTTAT TAATTAGTTT GTGTGAATAG ACTCAGAGCG TATACTTTTC
  CATGTATCCC CGCCACCCCT TAGTTCTGTT TGTTGGTCCT TCCCAGGAGA GGGTTAAGGC
  TCCTGAAAAC AAAGCTTACA GTGTACCCAA GGAGGAAGCA AGGCACCTCC CCCCCCCCCC
  Y
  CCCCGAGACA AAAGAGCAGA CTCACAATGA CTTTGCAGCC AAGTTCTTCT GGCTTGTATC
  CCTTTCTTCT GCAGCCAAAG GAAATGTAGA TTACTTTTCT CTTCACCAAG AAACCATGGA
  GTTACAGCAA CAGTATTATT AAGTAAAATA TGCAAGGCAC TGAAAGCATA TAAATCATGC
  ACAGACACAT TAAAGAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359495985	MGP_WTSI_3_121946525	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260800350					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359495985	MGP_WTSI_3_121946525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1610 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1950 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1592 bp upstream
Rr584261	regulatory region 584261	493 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	388 bp distal
Rr584264	regulatory region 584264	246 bp proximal
Rr584265	regulatory region 584265	1135 bp proximal
Rr584266	regulatory region 584266	1733 bp proximal
Rr584267	regulatory region 584267	1866 bp proximal
Tssr31477	transcription start site region 31477	478 bp downstream
Tssr31478	transcription start site region 31478	1869 bp upstream
Tssr31479	transcription start site region 31479	1956 bp upstream
Tssr31480	transcription start site region 31480	1974 bp upstream
Tssr35443	transcription start site region 35443	1612 bp downstream
Tssr35444	transcription start site region 35444	1695 bp downstream