rs260803350 SNP Detail

Summary

• ID
  rs260803350
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTAGCC CATCACCCTG
  TCCCAGACTA GATCCAGACT AGGAGCAGAC TAGACCCAGC CTTGAGCTGC CTTTCCACCC
  CACTTTTCCC TCCAGTGGTC TACTGTTTCT CCAATTAGTA CATTAATTGA GGTAAATAAT
  CCTTTCCAAT AAACCCATGG GAATCGAGTA ATTCAGATAT TCATAATTAA GCAAATGAAA
  S
  AATGAAGCCT CGACTTGTAT TGGGTTTTTG TGTTTGGGTT TTTTGTTTTG TTTTGTTGCT
  TTAAAAACTG TTTTGGGAGA ACATCACACG TCAGTGCAGT ATTTAAGTCA TTTCCTACTT
  TCATTCTCAA CCTGGCTTCC AGAAGGGCCC AGGGAAGACT CAAAACACCT TCAGATTTAA
  AACAAACTAT AATATAGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383506464	MGP_WTSI_11_57644302	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260803350					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383506464	MGP_WTSI_11_57644302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	1058 bp distal
Cpgi2912	CpG island 2912	435 bp proximal
Cpgi2913	CpG island 2913	1882 bp proximal
Gm32915	predicted gene, 32915	1308 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447813	regulatory region 447813	1316 bp distal
Rr447814	regulatory region 447814	53 bp distal
Rr447815	regulatory region 447815	1337 bp proximal
Tssr3506	transcription start site region 3506	1529 bp upstream
Tssr101646	transcription start site region 101646	886 bp upstream
Tssr101647	transcription start site region 101647	894 bp upstream
Tssr101648	transcription start site region 101648	907 bp upstream
Tssr108123	transcription start site region 108123	1837 bp upstream
Tssr108124	transcription start site region 108124	1780 bp upstream
Tssr108125	transcription start site region 108125	1735 bp upstream
Tssr108126	transcription start site region 108126	1554 bp upstream
Tssr108127	transcription start site region 108127	1487 bp upstream
Tssr108128	transcription start site region 108128	1475 bp upstream
Tssr108129	transcription start site region 108129	1340 bp upstream
Tssr108130	transcription start site region 108130	963 bp downstream
Tssr108131	transcription start site region 108131	1204 bp downstream
Tssr108132	transcription start site region 108132	1284 bp downstream
Tssr108133	transcription start site region 108133	1342 bp downstream
Tssr108134	transcription start site region 108134	1879 bp downstream