rs260807759 SNP Detail

Summary

• ID
  rs260807759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58886468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCAGGTAC TGGGTGGCAC TCAGCATCTG
  CCACAGGTAG TCCTTCACAT CAGACTCTGA GTAGGATTCC CTAGGGGCAC AGACGGTTCA
  GAACAGGCCC AAGGCAGGTA GAATGGGTAT CCTAGCAGGG CTTGGCACAT GTGGGAAGGC
  Y
  GAGAACACTG CCCTTGGCAA GCCAGAAGGG GCCTCAGGTT CTGCAGAGTC CCAGCTAGAT
  AGGGTCAGAC AGTTCTCACA GTCCCTCCCA GAGATCTCTG CTTGCATGAC TGATCATCTC
  ACAGGCAGAC CAGGCTACCC CTCACCTCTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323695552	CHEV_11_58809144	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260807759					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58886468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	838 bp distal
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	Intron
Rr448070	regulatory region 448070	376 bp proximal