rs260808546 SNP Detail

Summary

• ID
  rs260808546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113619167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGCATTT AGCAAGTCTT
  AAAGGGTCAT CCACGTTGTA GTCAATGTGA GTTCTGTATC CCCTTCCTTC CTTCCGTCCC
  CTCCCTCATG TCTCTCTTCC ACCCCTTCAG TTTCTCTCAT TTACTCTCCT CCCTCCTTTT
  CCAGTGATGA AAACAGAACC CAGGGTCTCT CACATGCAGG GCTGTGCTCC TTGTTCTAGT
  R
  TCTCTGCCTC TCTGTCTCTG TCTGTCTCTC TGTCTCTGTC TCTCTGTCTC TCTCTAACTT
  TTGGGTTTTC GAGACAGGGT TTCTCTGTGT AGTTCTGGCT GTCCTGGAAC TCCCTCTATA
  GACCAGGCTG GTCTCGAACT CAAAGGTCCA CCTGCCTCTG CCTCCTATGG GCTGGGATTA
  AAGGCATGCA CCATCACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911288	CHEV_6_113592200	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260808546					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113619167 () rs orientation: forward

Symbol	Name	Function Class
Gm43964	predicted gene, 43964	646 bp upstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates