rs260814178 SNP Detail

Summary

• ID
  rs260814178
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74694492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTCAAAT TATTTAATGT
  CAAAGTTTCC CATGGCAAAT GGAGAGATTA ATCCTAACCA AGGAAGCATA TCCATACAAG
  GATTCAGTTT AGGAGGAAAG AAGGAAGGAA GAGGCTTTGA AGGATGGTCA TTAGAGCTTT
  ATGAGCTTCT CTGCTTTGTA GAAATCATTT TCAAAGCTTA GCTCAAGTGC TACCTCCACC
  W
  CGCAGGCCTC CTACCGCATT CACCACCATT CATTAATCAA CTCGTTGTTG ATGTCTAAAC
  TCTTTGTCTA GACAATGATT TGAAAGACAA ACTCTTTTCC AGACTGGAAA GAAAAGCAAT
  TCACTCTGCA AAAGACAATC AACTCTCTCA TGAAACCACC CAATTTTACT TTAGATGCAC
  TTAACAGTGA GAATGGAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365470991	MGP_WTSI_5_74929856	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260814178					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365470991	MGP_WTSI_5_74929856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74694492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15971	CpG island 15971	1896 bp distal
Cpgi15972	CpG island 15972	1478 bp proximal
Fip1l1	factor interacting with PAPOLA and CPSF1	1618 bp upstream
Rr399135	regulatory region 399135	1926 bp downstream
Rr399136	regulatory region 399136	1369 bp upstream
Rr613305	regulatory region 613305	1582 bp distal
Rr613306	regulatory region 613306	1128 bp proximal
Rr613307	regulatory region 613307	1661 bp proximal
Tssr46674	transcription start site region 46674	1635 bp upstream
Tssr46675	transcription start site region 46675	1704 bp upstream
Tssr46676	transcription start site region 46676	1810 bp upstream