rs260816602 SNP Detail

Summary

• ID
  rs260816602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79517463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTATGG GTGTCTGTGC
  TGAACAACCT CAAGGTCTTT GCGTGTCTGT TCCGGATCCT GTAAACTTTT GGGTTATGCC
  TCACCACTGC TTTCTGGTCG ATTTAAGCAA GACTAGGGTG TGGTCAAAGG TCAGTCTGAA
  GGGGTTCAGA CTCCACCTCC TGGAAGCCAC GTCTGCAAAC CCCAAGTCGT TGATTCCCTG
  Y
  GCTTCTACCT GAGCCCATAG AGACCAAATG GGGCCATCTA ACGCTTCATG CTGGGAAACA
  GGGGCGGATC CTGCTCCGCT CCCGCACAAG CCACGCCCAA TTCCCCACCC ACAACCACGC
  CCCCTGAACG TCACAAAAAA AGGCCCCCAA AGCCGCAGCT GCCACTCCGC AGCGCGCAGC
  CCGGCCCTGC CGGCCACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381007689	MGP_WTSI_10_79144374	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260816602					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381007689	MGP_WTSI_10_79144374	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79517463 () rs orientation: forward

Symbol	Name	Function Class
Cdc34	cell division cycle 34	566 bp upstream
Cpgi1800	CpG island 1800	within coordinates
Gm67172	predicted gene, 67172	within coordinates
Rr402019	regulatory region 402019	25 bp upstream
Rr434866	regulatory region 434866	720 bp distal
Rr434867	regulatory region 434867	33 bp distal
Rr434868	regulatory region 434868	76 bp proximal
Rr434869	regulatory region 434869	786 bp proximal
Rr434870	regulatory region 434870	1863 bp proximal
Tssr3269	transcription start site region 3269	589 bp downstream
Tssr3270	transcription start site region 3270	196 bp upstream
Tssr94367	transcription start site region 94367	155 bp upstream
Tssr94368	transcription start site region 94368	518 bp upstream
Tssr94369	transcription start site region 94369	540 bp upstream
Tssr94370	transcription start site region 94370	603 bp upstream
Tssr94371	transcription start site region 94371	677 bp upstream
Tssr94372	transcription start site region 94372	741 bp upstream