rs260820861 SNP Detail

Summary

• ID
  rs260820861
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130659896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGGAGTAG GGAGGGAAGC TAGGATTGGC
  TTAGAGTCAG TAGCAGGGTG TGTCCATGCA GCGCGGGTGA AGCTTTTACC TGTCTAGGTA
  AGTCAGGAGG AGGTCAAAGG AAGAAACCAG TAGGAGACAC GGCCTGAGAG GCAAGCGGTC
  C
  CCATCTCTGC CCTCTGGAAT AGAAGGGCAT TACGTTCTTG TCTTCAGACC CCAACCCAGA
  GAAGGTGAGT CAATCACTAA CCAACTATTG CTTATTCTGC AGCAAGGGAA AAGCTTTTAA
  GGGAAGGCAA AGCTATATAT AGGGCTGTGC                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319973022	CHEV_1_132628736	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260820861					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130659896 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			mRNA-UTR
				Noncoding-Transcript-Variant
Gm70818	predicted gene, 70818			1284 bp downstream
Rr417949	regulatory region 417949			173 bp distal
Rr417950	regulatory region 417950			within coordinates
Rr417951	regulatory region 417951			573 bp proximal
Rr417952	regulatory region 417952			1660 bp proximal
Tssr8565	transcription start site region 8565			168 bp downstream
Tssr8566	transcription start site region 8566			107 bp downstream
Tssr8567	transcription start site region 8567			58 bp downstream
Tssr8568	transcription start site region 8568			24 bp downstream
Tssr13523	transcription start site region 13523			459 bp downstream
Tssr13524	transcription start site region 13524			1691 bp downstream