rs260823495 SNP Detail

Summary

• ID
  rs260823495
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108146690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTGGAT CCCTCTGTTA
  AGTAGGATTG AGGCTTTGGA AAGTGTTCCG TGACTCTTGA ACCACGGAAC TCAGGTAGGA
  CCAGGAATGA AAAGGGACTT CCTCGATAAG ACTCGTTCTT ACCCAGACGT CATCCTCTCC
  TGAGTGCTTG TTTGCCTCGG TGTTAGGGGA ACTGATCTTT ATTAAGTTGA GAAATAACAT
  K
  TATATGTTAA TCTGAAAACG TTTAAGCAGT TTAACCTGCC TAATGTATTC TTGGTGGTGT
  TCTTAACTTT GGACTACCAA TAAAACACAG CTTTCCATAA GTCACTCAGT GTTTAAAATC
  AGTTATCACA GACTGGCTGT CTTCCTACGT AACCCTGGCT GGTGTGTAGC TCTCTCTGTA
  AACTAGGCTG GCCTCCAGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387282966	MGP_WTSI_12_109418641	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260823495					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387282966	MGP_WTSI_12_109418641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108146690 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	within coordinates
Cpgi5076	CpG island 5076	42 bp distal
Rr403488	regulatory region 403488	801 bp downstream
Rr472439	regulatory region 472439	1226 bp distal
Rr472440	regulatory region 472440	683 bp distal
Rr472441	regulatory region 472441	within coordinates
Rr472442	regulatory region 472442	507 bp distal
Setd3	SET domain containing 3	1117 bp upstream
Tssr114948	transcription start site region 114948	1934 bp downstream
Tssr114949	transcription start site region 114949	1571 bp downstream
Tssr114950	transcription start site region 114950	1297 bp downstream
Tssr114951	transcription start site region 114951	1262 bp downstream
Tssr114952	transcription start site region 114952	849 bp downstream
Tssr114953	transcription start site region 114953	600 bp downstream
Tssr114954	transcription start site region 114954	508 bp downstream
Tssr117676	transcription start site region 117676	1206 bp upstream
Tssr117677	transcription start site region 117677	1092 bp upstream