rs260833443 SNP Detail

Summary

• ID
  rs260833443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74771138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAGGTT TTGAGCCGCG
  GGCAGAGAGA CTCTTGGAAC CTGGCGGAAT CTCAGCGGAA CACAAGAGGG TTTAGGAAGG
  GACGAAGCAT ACCAAGAACT AGCACCCGTT GCTCAAGGCA CATACCCCGC GCGGGCCAGG
  CGCTGTTCAA GCTGCCAGTC AATATTGGCT GAGCTGGCTG CGGCGACCCG CTCTTGGCCG
  R
  TTTTATTGGC GCCACGCGCA AGGGGGTCCG CACTTCAATA GGGTGTGCAC ACAGATTCCA
  AACCTGCAGG CGATCAGTGC ATGGCGGGCT GCTTTGGAGG GGTTATCACA CATCGCTGAG
  TATATAACCA GCTGTGGAAA GGAAGGGGAC AGAGGCGGAC AGTGACCAGA TCCCCCAGGA
  AACTCCCGGT TGAGCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378074139	MGP_WTSI_9_74711663	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260833443					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378074139	MGP_WTSI_9_74711663	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74771138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22034	CpG island 22034	within coordinates
Gm20649	predicted gene 20649	within coordinates
Gm33562	predicted gene, 33562	720 bp upstream
Gm38678	predicted gene, 38678	1942 bp upstream
Gm68752	predicted gene, 68752	390 bp upstream
Onecut1	one cut domain, family member 1	within coordinates
Rr206725	regulatory region 206725	within coordinates
Tssr2940	transcription start site region 2940	1919 bp downstream
Tssr86108	transcription start site region 86108	1992 bp downstream
Tssr86109	transcription start site region 86109	1972 bp downstream
Tssr86110	transcription start site region 86110	1941 bp downstream
Tssr86111	transcription start site region 86111	1779 bp upstream
Tssr90520	transcription start site region 90520	420 bp upstream