rs260836038 SNP Detail

Summary

• ID
  rs260836038
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:44381759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCTTTA AGATAATAGG
  AAAGATGAGC TGGAGAGTTG GCTCAGCTAA GTGTACTTAG TGTTTGTCCC GTGGACCCAG
  GTTTGGCTCC CAGCACTCAC ATGAAGTGGC TCACAACCAT CCGTAACTCT AGTTTCATGG
  GACCCATCAC CTCTGGCCTT TGGTGGTATC TGCACTCATG TGCACATACC CACTTGCACT
  S
  TCGTGTGCTT GTGCACCCCC CCCACAACTA AAAATAATAA AAATAAAAAT TTTTAAAGAT
  ATATTTATTT TATGTATGTG AACACACTGT TGCTCTCTCC ATACACACCA GAAGAGGGCA
  TCACAGATGG CTGTGAGCCA CCGTATGGCT GCTGGGAATT GAACTCAGGA CCTCTGGAAG
  AGCAGTCAGC GCTCACCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100994	CHEV_4_44394631	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260836038					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44381759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14212	CpG island 14212	995 bp distal
Gm12455	predicted gene 12455	1163 bp upstream
Gm68903	predicted gene, 68903	within coordinates
Rr89080	regulatory region 89080	42 bp proximal