rs260840227 SNP Detail

Summary

• ID
  rs260840227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191178665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTATATAGC ACAGGCTGAC CTTGAACTCC TGACCTTCCT
  GTCTGTAGCT CCCAGTTCCT GAGATTACAA GTGTGTGCTG CCACAGCTGC CCGCCCCCCC
  Y
  CTATCCTCTT TTACTGACCA CCTTCGTGTT AGGTTCAAGA GCAGAGAATA CAGAACAACA
  ACAACAAAAA CTAGAGAGCG TGAAGCACTG GGTAGTAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320195308	CHEV_1_193270347	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260840227					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191178665 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	within coordinates
Tssr15793	transcription start site region 15793	650 bp upstream