rs260845324 SNP Detail

Summary

• ID
  rs260845324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:122822060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCGGAAG TCCCCGCGGA
  CGCGCCCCGC ACCCCCCGGG AGACCCCGGC AGCCCGGCCC CGGCGGCTCC GCGCGCGCCC
  CGTCTCGCGC TCTTGCTCCA CTGCGGCCGG GCGAACCATA GAGATCCCTT AAAGAGGCTG
  GCGCGCTCCC CACCACGTGA CCGGCCGCCG TGTCTCTCTC TCTCTCTCCC CCCCCCCCCA
  Y
  CCCCGCCGCC ATCTTACATC CGGGGCCCCG CGCCCGCTCT CCGCCCGGGC GAGCCTCGGG
  GCTCGCGGGA AAGGCGGTCA CGGGCTGGGG ACTCCTGCCG CACGCCCAGG CCTGCCGGGG
  CCTCGGGCCG AGCTCCGTCC GCTCGGCGCG CCTTCCGGAG CCCCGGTGCT CCCGGCGGGC
  GCTGTAAAGA TGGCGGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J
ss382064146	MGP_WTSI_10_122423211	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J
rs260845324					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382064146	MGP_WTSI_10_122423211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122822060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2309	CpG island 2309	within coordinates
D630033A02Rik	RIKEN cDNA D630033A02 gene	Noncoding-Transcript-Variant
Gm63655	predicted gene, 63655	324 bp upstream
Mirlet7i	microRNA let7i	431 bp upstream
Rr402310	regulatory region 402310	932 bp downstream
Rr402311	regulatory region 402311	528 bp upstream
Rr402312	regulatory region 402312	1599 bp upstream
Rr440469	regulatory region 440469	335 bp distal
Rr440470	regulatory region 440470	within coordinates
Rr440471	regulatory region 440471	1139 bp proximal
Tssr96078	transcription start site region 96078	419 bp upstream
Tssr99656	transcription start site region 99656	513 bp upstream
Tssr99657	transcription start site region 99657	91 bp upstream
Tssr99658	transcription start site region 99658	314 bp downstream