rs260847262 SNP Detail

Summary

• ID
  rs260847262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126648832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGACCGGC TCTGTCGTTA
  TTCAAACATA TCTTATCGCT GTGTATATAA ATGGAGTTCC ACGTATGTAG CTGACAGACT
  GAACTATGAT ACATTCCCCA TCAACCTGAA GTATTAAGTA AACATTACCC CCTGCTGTAT
  CTGAACAGCT GCTGCAACAG CGTGCTTTTA TTTCGGGTGT ACTTGTAACG CCCTAAATGC
  Y
  AGAACTACCG GGAGCTTTTC TAGATTTTCA TTTGTCGAGT ATTGTGGGGG TGTGTGTGTT
  CTCTCCCTGG GTTGCTACCC TTTGATTTGA TAACAAACAT TTTGGGTCTT AGCAGTGTTT
  TGTCGTTCCT GCCTCTGGTC AGCAAGCCTT TAACTGGACC CTAGCAGTGA TTTGTGCCCA
  TAGGCAATTG TAGGTTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363163001	MGP_WTSI_4_126432283	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260847262					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363163001	MGP_WTSI_4_126432283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126648832 () rs orientation: forward

Symbol	Name	Function Class
AU040320	expressed sequence AU040320	within coordinates
Cpgi14831	CpG island 14831	723 bp distal
Ncdn	neurochondrin	1629 bp upstream
Rr398495	regulatory region 398495	1430 bp downstream
Rr599753	regulatory region 599753	1690 bp distal
Rr599754	regulatory region 599754	1259 bp distal
Rr599755	regulatory region 599755	382 bp distal
Rr599756	regulatory region 599756	1084 bp distal
Rr599757	regulatory region 599757	within coordinates
Tssr1300	transcription start site region 1300	1732 bp upstream
Tssr39018	transcription start site region 39018	1204 bp downstream
Tssr39019	transcription start site region 39019	1159 bp downstream
Tssr39020	transcription start site region 39020	1509 bp upstream
Tssr39021	transcription start site region 39021	1944 bp upstream
Tssr39022	transcription start site region 39022	1967 bp upstream
Tssr43398	transcription start site region 43398	1985 bp upstream
Tssr43399	transcription start site region 43399	1678 bp upstream
Tssr43400	transcription start site region 43400	1599 bp upstream
Tssr43401	transcription start site region 43401	1395 bp upstream
Tssr43402	transcription start site region 43402	1359 bp upstream
Tssr43403	transcription start site region 43403	1310 bp upstream
Tssr43404	transcription start site region 43404	1257 bp upstream