rs260847617 SNP Detail

Summary

• ID
  rs260847617
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95253186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTAAGCC ACCAGTACCT
  GCCCCTGTGT CTGCAACAGC TGAGCACCTC GGTCCCGCGA ATAGCAGCCC CTCTTCTCCC
  CAGCCCTCCA CGTAGGAGGG AACCTTTAGG CCAGCCATCC ACCCCGCTGT GCGCCTGCCA
  GACGCGACCC TCCTCTCCTC CATGTGGGAT GCAGGACCAG CGTGCGGGAA GGGGGCGGGG
  M
  TCAGATGTCC GTCCCTCCCT CTCTAAGACA CACACAGAGC TAGAGCTAGC ACGCCACTGC
  CCAGGTCGAC TACCACTCCC GGGCACCTCG GGAAGCGAAC CAGAGACTGT CCCCTCCGCC
  AGCATCCTAG AAGGCCAGGA AAGAGACGAG CTGAGCGCCT CCTTAAAGCT GCGCAGACTG
  CCCTCAATCC CTCCCCCCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381349752	MGP_WTSI_10_94879958	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260847617					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381349752	MGP_WTSI_10_94879958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95253186 () rs orientation: forward

Symbol	Name	Function Class
5730420D15Rik	RIKEN cDNA 5730420D15 gene	51 bp upstream
Cpgi2139	CpG island 2139	within coordinates
Rr225467	regulatory region 225467	within coordinates
Rr385140	regulatory region 385140	99 bp downstream
Socs2	suppressor of cytokine signaling 2	144 bp upstream
Tssr95358	transcription start site region 95358	1697 bp downstream
Tssr95359	transcription start site region 95359	331 bp downstream
Tssr95360	transcription start site region 95360	57 bp downstream
Tssr95361	transcription start site region 95361	28 bp upstream
Tssr95362	transcription start site region 95362	1358 bp upstream
Tssr99033	transcription start site region 99033	1841 bp upstream
Tssr99034	transcription start site region 99034	1813 bp upstream
Tssr99035	transcription start site region 99035	1318 bp upstream
Tssr99036	transcription start site region 99036	1289 bp upstream
Tssr99037	transcription start site region 99037	592 bp upstream
Tssr99038	transcription start site region 99038	490 bp upstream
Tssr99039	transcription start site region 99039	463 bp upstream
Tssr99040	transcription start site region 99040	247 bp upstream
Tssr99041	transcription start site region 99041	214 bp upstream
Tssr99042	transcription start site region 99042	55 bp upstream