rs260854279 SNP Detail

Summary

• ID
  rs260854279
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151851156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCCTCTT ATGCACAGCC AACGGGGGTG
  GGGGGAGAAG GAAGCCACCA AAGCCCTCCC CTCACCTACT CTGCCCTTCT CTAGCTGATG
  ATCATCCAGA AGATCTTCAG GCTGATGTCA AACTACATTA TGCGGGTTAT CTCCCCTCTG
  K
  AGAACTTAAG CGCCGTATGT ATTTGGGCCA AGTCTAACGC TGAAGCGATA ACCACATGCT
  AGGGAAGTAT TTAGTCtgct gttggtttat atgtggcatc tcctccatgg gttcctgtgt
  ttggtcactt gattgttctg gaaggctgtg                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320061194	CHEV_1_153822535	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260854279					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151851156 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	116 bp distal
Rr420391	regulatory region 420391	12 bp proximal