rs260857555 SNP Detail

Summary

• ID
  rs260857555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT CTGTGGGGTA GAGGCTGGGT
  R
  GATGAGACCA TTTCCTGTAC CTCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730637	CHEV_11_69414350	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260857555					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491674 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	1109 bp distal
Rr450034	regulatory region 450034	1238 bp distal
Rr450035	regulatory region 450035	186 bp distal
Tssr3544	transcription start site region 3544	144 bp upstream
Tssr102487	transcription start site region 102487	808 bp downstream
Tssr102488	transcription start site region 102488	315 bp upstream
Tssr102489	transcription start site region 102489	390 bp upstream
Tssr108712	transcription start site region 108712	830 bp upstream
Tssr108713	transcription start site region 108713	679 bp upstream
Tssr108714	transcription start site region 108714	611 bp upstream
Tssr108715	transcription start site region 108715	577 bp upstream
Tssr108716	transcription start site region 108716	273 bp upstream
Tssr108717	transcription start site region 108717	259 bp upstream
Tssr108718	transcription start site region 108718	195 bp upstream
Tssr108719	transcription start site region 108719	193 bp upstream
Tssr108720	transcription start site region 108720	177 bp upstream
Tssr108721	transcription start site region 108721	168 bp upstream
Tssr108722	transcription start site region 108722	90 bp upstream
Tssr108723	transcription start site region 108723	53 bp upstream
Tssr108724	transcription start site region 108724	7 bp upstream
Tssr108725	transcription start site region 108725	10 bp downstream
Tssr108726	transcription start site region 108726	105 bp downstream
Tssr108727	transcription start site region 108727	127 bp downstream
Tssr108728	transcription start site region 108728	171 bp downstream
Tssr108729	transcription start site region 108729	258 bp downstream
Tssr108730	transcription start site region 108730	290 bp downstream
Tssr108731	transcription start site region 108731	321 bp downstream
Tssr108732	transcription start site region 108732	382 bp downstream
Tssr108733	transcription start site region 108733	1604 bp downstream
Tssr108734	transcription start site region 108734	1895 bp downstream
Tssr108735	transcription start site region 108735	1962 bp downstream
Tssr108736	transcription start site region 108736	2000 bp downstream