rs260860471 SNP Detail

Summary

• ID
  rs260860471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128656073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATAGTCC ATCTGCTCCC
  AATGTGTCAA AAGCCGAGCC TTTCCTTGGT CAGGGGTCTC AAAGGGCGTC CCTTTGACTG
  TATGTAGGAA GATATACATT GCCTGGGAAG AGGGAAAGGG ACAGTATAAG GGGTAGGAAG
  TAGTCCTTTG GGTCAAGATC CCAAAAGGAA GACATAAATC CCCGAACAGC TGGTGACTTT
  R
  TTTTGTTTTG GTTGGGATAG ACCTGGGTTG GGTACAGGGT TTGGTTTAGT GCTCACCAAG
  TTATGGATGA CGTTGGTCAG GGTCCAGACA ACAGGAATGC TGAAGAAAGG GATGCTGAGG
  AGAACCACAT GCAGCAGTCC TACCAAGATG ATGTAGGCCA GCCAGATGCC CCGACTGTTC
  ATCACTCGAG TGTTGGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536205	CHEV_10_128257260	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260860471					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128656073 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2421	CpG island 2421			1250 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14			756 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Rr402366	regulatory region 402366			1317 bp upstream
Rr441331	regulatory region 441331			825 bp proximal
Rr441332	regulatory region 441332			1377 bp proximal
Rr441333	regulatory region 441333			1704 bp proximal
Rr441334	regulatory region 441334			1721 bp proximal
Sarnp	SAP domain containing ribonucleoprotein			Intron
				Noncoding-Transcript-Variant
Tssr96457	transcription start site region 96457			530 bp downstream
Tssr96458	transcription start site region 96458			1522 bp upstream
Tssr96459	transcription start site region 96459			1541 bp upstream
Tssr96460	transcription start site region 96460			1580 bp upstream
Tssr96461	transcription start site region 96461			1683 bp upstream
Tssr99967	transcription start site region 99967			1372 bp downstream