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rs260870800 SNP Detail
Summary
  • ID
    rs260870800
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93352526 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGCAGGAGG AAGAGCGGCT
GCAGAGAGAA AGAAGGCGCC TGCAGCAGGA AAGGCAGTAT CAGGAGGAGG ACCTGCAGCG
GCTGCGGGAT GAAGATCAGC GCAGGGATCT GAAATGGCAG TGGCAACCAA GGAAAGAAAA
TGAAGTTCGT AGTAACAGGC TCTTCACCAA ACGCAGAGGG GATGAGGAAC CCATCCAGCA
K
CTGGAAGATT CTCAGGAGCG AGAGAGACGT CAGGATCGGC GGCCTCTGCA AGACGAAGAG
GAAGAGAAGA GAGAGCTGGA GCAGGAGAGG AGGCGTCGAC AGCAGCGCGA CCGTCAGATC
CTAGAGGAAG AGCAGTTTCA GCGAGAGCAC CAACGGGAAG CCAGAAGACG AGATGAGACG
TTCCAGGAGG AAGAACAGCT                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876333 MGP_WTSI_3_93249141 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260870800 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876333 MGP_WTSI_3_93249141 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93352526 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 425 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1789 bp downstream
Tssr961 transcription start site region 961 1213 bp downstream
Tssr962 transcription start site region 962 93 bp downstream
Tssr963 transcription start site region 963 57 bp downstream
Tssr964 transcription start site region 964 37 bp upstream
Tssr30347 transcription start site region 30347 1746 bp downstream
Tssr30348 transcription start site region 30348 1726 bp downstream
Tssr30349 transcription start site region 30349 1714 bp downstream
Tssr30350 transcription start site region 30350 1670 bp downstream
Tssr30351 transcription start site region 30351 1646 bp downstream
Tssr30352 transcription start site region 30352 1596 bp downstream
Tssr30353 transcription start site region 30353 1577 bp downstream
Tssr30354 transcription start site region 30354 1562 bp downstream
Tssr30355 transcription start site region 30355 1543 bp downstream
Tssr30356 transcription start site region 30356 1489 bp downstream
Tssr30357 transcription start site region 30357 1434 bp downstream
Tssr30358 transcription start site region 30358 1316 bp downstream
Tssr30359 transcription start site region 30359 1290 bp downstream
Tssr30360 transcription start site region 30360 1260 bp downstream
Tssr30361 transcription start site region 30361 935 bp downstream
Tssr30362 transcription start site region 30362 919 bp downstream
Tssr30363 transcription start site region 30363 777 bp downstream
Tssr30364 transcription start site region 30364 705 bp downstream
Tssr30365 transcription start site region 30365 670 bp downstream
Tssr30366 transcription start site region 30366 617 bp downstream
Tssr30367 transcription start site region 30367 578 bp downstream
Tssr30368 transcription start site region 30368 554 bp downstream
Tssr30369 transcription start site region 30369 550 bp downstream
Tssr30370 transcription start site region 30370 541 bp downstream
Tssr30371 transcription start site region 30371 514 bp downstream
Tssr30372 transcription start site region 30372 504 bp downstream
Tssr30373 transcription start site region 30373 451 bp downstream
Tssr30374 transcription start site region 30374 437 bp downstream
Tssr30375 transcription start site region 30375 424 bp downstream
Tssr30376 transcription start site region 30376 388 bp downstream
Tssr30377 transcription start site region 30377 362 bp downstream
Tssr30378 transcription start site region 30378 340 bp downstream
Tssr30379 transcription start site region 30379 323 bp downstream
Tssr30380 transcription start site region 30380 244 bp downstream
Tssr30381 transcription start site region 30381 227 bp downstream
Tssr30382 transcription start site region 30382 172 bp downstream
Tssr30383 transcription start site region 30383 161 bp downstream
Tssr30384 transcription start site region 30384 152 bp downstream
Tssr30385 transcription start site region 30385 127 bp downstream
Tssr30386 transcription start site region 30386 105 bp downstream
Tssr30387 transcription start site region 30387 11 bp downstream
Tssr30388 transcription start site region 30388 within coordinates
Tssr30389 transcription start site region 30389 13 bp upstream
Tssr30390 transcription start site region 30390 85 bp upstream
Tssr30391 transcription start site region 30391 104 bp upstream
Tssr30392 transcription start site region 30392 122 bp upstream
Tssr30393 transcription start site region 30393 139 bp upstream
Tssr30394 transcription start site region 30394 159 bp upstream
Tssr30395 transcription start site region 30395 184 bp upstream
Tssr30396 transcription start site region 30396 233 bp upstream
Tssr30397 transcription start site region 30397 250 bp upstream
Tssr30398 transcription start site region 30398 325 bp upstream
Tssr30399 transcription start site region 30399 372 bp upstream
Tssr30400 transcription start site region 30400 857 bp upstream
Tssr30401 transcription start site region 30401 877 bp upstream
Tssr30402 transcription start site region 30402 976 bp upstream
Tssr30403 transcription start site region 30403 1016 bp upstream
Tssr34352 transcription start site region 34352 1335 bp upstream
Tssr34353 transcription start site region 34353 1329 bp upstream
Tssr34354 transcription start site region 34354 1278 bp upstream
Tssr34355 transcription start site region 34355 1181 bp upstream
Tssr34356 transcription start site region 34356 500 bp upstream
Tssr34357 transcription start site region 34357 435 bp upstream
Tssr34358 transcription start site region 34358 376 bp upstream
Tssr34359 transcription start site region 34359 301 bp upstream
Tssr34360 transcription start site region 34360 256 bp upstream
Tssr34361 transcription start site region 34361 199 bp upstream
Tssr34362 transcription start site region 34362 186 bp upstream
Tssr34363 transcription start site region 34363 161 bp upstream
Tssr34364 transcription start site region 34364 146 bp upstream
Tssr34365 transcription start site region 34365 120 bp upstream
Tssr34366 transcription start site region 34366 52 bp upstream
Tssr34367 transcription start site region 34367 54 bp downstream
Tssr34368 transcription start site region 34368 133 bp downstream
Tssr34369 transcription start site region 34369 158 bp downstream
Tssr34370 transcription start site region 34370 172 bp downstream
Tssr34371 transcription start site region 34371 226 bp downstream
Tssr34372 transcription start site region 34372 989 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory