rs260873285 SNP Detail

Summary

• ID
  rs260873285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75414642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTGGGT TTTGTCTAGA
  AGGGGCTAAG CACCTGTCTT CTCAGCCCTG TGTGTCTTGC CTCCCTCTAA CAGAGACCAG
  CAGCCACCTG GGGTGGCTGG GGGTGTGGGG GGTGTGGTGG GGGGAAATAT GGGGGGGGAG
  TTTTTTGGCT TAGTTCTTGC CAAGTTCTCT GCATTTATCA TCCCCCACCC CAAAACCTGA
  R
  TTACTTTTCC CCATCTTTAA AGCCAAGCCA TGTTTTGATA CCTGTCAGTT GGACTATTTT
  AGGAAGGCTA TTTACTCTCA TTTGGTCAAC TTTAAGATGT TTTCGGGAAA GAGCGTATTG
  ATCATTTAGA CTGTGCTGCT AGTAATTCTA ATGGAGGTGG TTTAATTTTA GCTTCTGTGG
  TTGTTTTTCC TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391577271	MGP_WTSI_14_75577009	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260873285					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391577271	MGP_WTSI_14_75577009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75414642 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	808 bp upstream
Rr404213	regulatory region 404213	220 bp downstream
Rr495436	regulatory region 495436	1797 bp distal
Tssr126623	transcription start site region 126623	597 bp downstream
Tssr126624	transcription start site region 126624	559 bp downstream
Tssr126625	transcription start site region 126625	405 bp downstream
Tssr126626	transcription start site region 126626	380 bp downstream
Tssr126627	transcription start site region 126627	298 bp downstream
Tssr126628	transcription start site region 126628	48 bp downstream
Tssr126629	transcription start site region 126629	607 bp upstream
Tssr126630	transcription start site region 126630	646 bp upstream
Tssr129769	transcription start site region 129769	599 bp upstream
Tssr129770	transcription start site region 129770	520 bp upstream
Tssr129771	transcription start site region 129771	1199 bp downstream