rs260873823 SNP Detail

Summary

• ID
  rs260873823
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGCCTC ATGTCCATGA
  TTTTAAGACC CTCTAGCCCC CATCCCTTCC CTAGTGCAGG CTACATGGAG ACTGAGGGCC
  TCTCAGCCTG GGGGCATGGT GGGATTTTAT AGACATGAAT CAAGGCTTCA TTAACTCATT
  CATACAACAA TTCATCTATC CATTCAGTAG ACTTCAGCAT GCCCATCTTG TGCCAGAAGG
  W
  ACCTCAAAGA GCTCCTCGTC CAGTGGGAAG AGAGCTGATC TCATTTGTAA GGAATACCCT
  CTTCATCCCC CACCCTTGCC ATTGATCTAT TCATTCCATC TCCATGACAA CAGGAAGAGA
  GGGCCCGGCG TGAGGAGGAG GAGAACAGGA GGAAGGCTGA GGATGAGGCC CGGAAGAAGA
  AGGCTCTGTC CAACATGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552073	MGP_WTSI_1_137745813	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260873823					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552073	MGP_WTSI_1_137745813	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776974 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1374 bp distal
Rr12645	regulatory region 12645	1427 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1496 bp downstream
Tssr226	transcription start site region 226	1226 bp upstream
Tssr227	transcription start site region 227	204 bp downstream
Tssr9015	transcription start site region 9015	1500 bp downstream
Tssr9016	transcription start site region 9016	1248 bp downstream
Tssr9017	transcription start site region 9017	1210 bp downstream
Tssr9018	transcription start site region 9018	1192 bp downstream
Tssr9019	transcription start site region 9019	1159 bp downstream
Tssr9020	transcription start site region 9020	388 bp downstream
Tssr9021	transcription start site region 9021	368 bp downstream
Tssr9022	transcription start site region 9022	107 bp upstream
Tssr9023	transcription start site region 9023	126 bp upstream
Tssr9024	transcription start site region 9024	220 bp upstream
Tssr9025	transcription start site region 9025	509 bp upstream
Tssr9026	transcription start site region 9026	711 bp upstream
Tssr9027	transcription start site region 9027	821 bp upstream
Tssr9028	transcription start site region 9028	861 bp upstream
Tssr9029	transcription start site region 9029	1441 bp upstream
Tssr9030	transcription start site region 9030	1476 bp upstream
Tssr9031	transcription start site region 9031	1535 bp upstream
Tssr13890	transcription start site region 13890	1461 bp upstream
Tssr13891	transcription start site region 13891	1216 bp upstream
Tssr13892	transcription start site region 13892	1149 bp upstream
Tssr13893	transcription start site region 13893	1132 bp upstream
Tssr13894	transcription start site region 13894	383 bp upstream
Tssr13895	transcription start site region 13895	339 bp upstream
Tssr13896	transcription start site region 13896	142 bp downstream
Tssr13897	transcription start site region 13897	213 bp downstream
Tssr13898	transcription start site region 13898	1501 bp downstream
Tssr13899	transcription start site region 13899	1569 bp downstream
Tssr13900	transcription start site region 13900	1579 bp downstream