rs260875511 SNP Detail

Summary

• ID
  rs260875511
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16886872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTTTTC CTGGAGTGCT
  TCCAGAAGTC AGGACGCTGG AAAAGGGCAC TGGAGTATCC ATGATATGAA CAGGTAGGTG
  TTAGAAGTGG GATGGGTAGG AAAGGAAGGC TGGAGGAGGC CTAACCAATG CTAAGGAAAT
  AGGAAAATGC CGTATATAAA CCTACTATTT TCTAAGCTAT TAAAAAAAAC ACATTTTTTA
  W
  AAGATTTATT TATTTCATGT ATGTGAATAC ACTGTCGCTG TCTTCAGACA CACCAGAAGA
  GGGCATCAGA TCCCGTTACA GATGGTTGTG AGCAATCCAT GTGGTTGCTG GGAGTTGAAA
  TCAGGACCTC TGGAAGAGCA GTCAGTGCTA TTAACTGCTG AGCCATCTCT CCCGCTTAAA
  TTCTTTAAAA ATAGAAGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395512679	MGP_WTSI_16_17069101	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260875511					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395512679	MGP_WTSI_16_17069101	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16886872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8003	CpG island 8003	671 bp proximal
Gm59807	predicted gene, 59807	within coordinates
Rr316811	regulatory region 316811	within coordinates
Rr324980	regulatory region 324980	328 bp proximal
Rr328576	regulatory region 328576	1007 bp distal
Tssr137265	transcription start site region 137265	1119 bp upstream
Tssr137266	transcription start site region 137266	1212 bp upstream
Tssr137267	transcription start site region 137267	1239 bp upstream
Tssr137268	transcription start site region 137268	1256 bp upstream
Tssr137269	transcription start site region 137269	1273 bp upstream
Tssr137270	transcription start site region 137270	1315 bp upstream
Tssr137271	transcription start site region 137271	1334 bp upstream
Ypel1	yippee like 1	688 bp upstream