rs260876336 SNP Detail

Summary

• ID
  rs260876336
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61677603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCCCTTC AAAAGGAAAA GTGTAAACTT
  TTACACCCTA TCATATTTGG ATTTTGGGTG TGATCTTCGG TGGAACACTT GGCACCTGCA
  CAGTGGCCTT AAAGTTCCCT CAGCTTAGCT AGCTCTCTTG TGGCTCCAAA GCAAAAGCTC
  K
  GCCTTCAGTC AGTCCCACCT CTCAGTACTT CAATTCTATG GCTACTTTAG AAGGTGTGGC
  AAAAGCACCT GCTCCGGAGC TTCCCTTGAA CCTCCCTCCA ACTCTCATTT TAAGGGAGTT
  GCTAGGCCAG TTTCCTATCT ATTCCAAGTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741950	CHEV_1_61685018	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260876336					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61677603 () rs orientation: forward

Symbol	Name	Function Class
4930587A21Rik	RIKEN cDNA 4930587A21 gene	within coordinates
Cpgi308	CpG island 308	161 bp proximal
Pard3b	par-3 family cell polarity regulator beta	380 bp upstream
Rr411949	regulatory region 411949	within coordinates
Tssr95	transcription start site region 95	468 bp upstream
Tssr6971	transcription start site region 6971	375 bp upstream
Tssr6972	transcription start site region 6972	425 bp upstream
Tssr6973	transcription start site region 6973	498 bp upstream
Tssr6974	transcription start site region 6974	549 bp upstream