rs260882169 SNP Detail

Summary

• ID
  rs260882169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31972066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATGGCCT TCTTTGGGGC
  CAGAGAGCAT GCAGAACAAG ACCCAAGGGC TCCAGGGTCC CATGTAGATC TATCTCATTC
  TAAGAGACCA AACCACAGAG ATGAAACCAA TGTGTCCCTC TAGCCGCTCC TAGTCAGGGC
  CCCACCGGAG GGACACTGGA TGCTGACCCT TGACCTCCAG TGGGAGCAAA GCTGCACACT
  K
  CAGAGCAAAC TGGGTTTCTG AAGTCCCTTT CAAACACACA CTGCCACGGC CCACCACCAC
  TGACAATGGT AAAGCTGGCC TCCGAAGCTC TTCTGTGCAT CTGAGCCTCC ACACACAACT
  CAGACAAGTT CAGACCCCAC GGCAAAGTCC TGTGCAAAGA AGTCTGGAAG CTGTTTTGAG
  GCTTCCAACC ACTCCCATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353550838	MGP_WTSI_2_31937574	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260882169					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353550838	MGP_WTSI_2_31937574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31972066 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020L05Rik	RIKEN cDNA 1700020L05 gene			308 bp upstream
Cpgi11492	CpG island 11492			544 bp proximal
Cpgi11493	CpG island 11493			1079 bp proximal
Fam78a	family with sequence similarity 78, member A			Intron
				Noncoding-Transcript-Variant
Rr396884	regulatory region 396884			526 bp downstream
Rr554792	regulatory region 554792			1870 bp distal
Rr554793	regulatory region 554793			824 bp distal
Rr554794	regulatory region 554794			675 bp distal
Rr554795	regulatory region 554795			10 bp distal
Rr554796	regulatory region 554796			1691 bp proximal
Rr554797	regulatory region 554797			1719 bp proximal
Tssr17241	transcription start site region 17241			492 bp downstream
Tssr17242	transcription start site region 17242			433 bp downstream
Tssr17243	transcription start site region 17243			1225 bp upstream
Tssr17244	transcription start site region 17244			1813 bp upstream
Tssr23455	transcription start site region 23455			1166 bp downstream
Tssr23456	transcription start site region 23456			1250 bp downstream
Tssr23457	transcription start site region 23457			1567 bp downstream
Tssr23458	transcription start site region 23458			1596 bp downstream
Tssr23459	transcription start site region 23459			1729 bp downstream