rs260883302 SNP Detail

Summary

• ID
  rs260883302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66205648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTTAGGC TTTACGAATT
  CAGGGACAGC AGAGGCCTTC GGGATTACTG ATGTATCATT GTCTCATTCT TAACCCGCTT
  CTGTTTCCTC CATCTGTCTG CCAAGGGACC AGCAAGCAGC CCAGTGCAGC GTTTAGGGAG
  CCAAGTACTT CGTGTATACT CTTCCCTAGC ACAATGCCTA CGCCATCTTC TATGTTTCTG
  Y
  TACTCTCCCA TTAAAATGGG AGCAAAGAAA AGGAGTGAAC GATGTGGAAG GATGTGGAAG
  ATGAACATGC AATAAGGTGG GCGTCGGGCG GTGGAATCCT GTGCCAGTTC TGGGCTGGAA
  GCAGGCCAGT GTAGTGTGTG GATTCCTTGT CCTCTAAGAC TCTTCTGTTG GGGCCTGATT
  GAGAGGTTTT TGGTAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367259	MGP_WTSI_14_66587036	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260883302					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367259	MGP_WTSI_14_66587036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66205648 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	445 bp upstream
Cpgi6638	CpG island 6638	269 bp proximal
Rr290025	regulatory region 290025	within coordinates
Rr297400	regulatory region 297400	within coordinates
Tssr126237	transcription start site region 126237	292 bp upstream
Tssr126238	transcription start site region 126238	312 bp upstream
Tssr126239	transcription start site region 126239	334 bp upstream
Tssr126240	transcription start site region 126240	345 bp upstream
Tssr126241	transcription start site region 126241	362 bp upstream
Tssr126242	transcription start site region 126242	395 bp upstream
Tssr126243	transcription start site region 126243	404 bp upstream
Tssr126244	transcription start site region 126244	414 bp upstream
Tssr126245	transcription start site region 126245	434 bp upstream
Tssr126246	transcription start site region 126246	452 bp upstream
Tssr126247	transcription start site region 126247	1515 bp upstream
Tssr126248	transcription start site region 126248	1542 bp upstream
Tssr126249	transcription start site region 126249	1602 bp upstream