rs260883724 SNP Detail

Summary

• ID
  rs260883724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28226824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGAGAG GGAGGGCGAA
  AGTGAGGGAG CTGGTCAGGA GGGCCGGGGG TGGGGGGCAC GCGGTCCCCT CGCTGGGCCA
  GTCAGTCTGT GGGGCACCGC ATCGCTTGGA AAGTTGCTGC AGGCTCCGAG GCACCGCCTC
  CGCCGTCCGG AGTCCGGATT GTGCGGCCGC TGCATTGCCA TCTCCTTCCG CGGCCTCCGC
  Y
  GGGCCCCACG ACCGCCCCTC GGACCCCGGC CGCGACCGAG GAGGTGGGCA GCCTCGGCCG
  CCATGGACCT CTGGAGTTGA GTCGCCACCG CGGAGCTCTG CGCCCTCCGT CCTCTCGCTC
  TGTTCTCTCT GGAAAGGCGG GGGGGTGGAA AGAAGAAGGT TAACCCGAAG AAAGGAAGAA
  AGAAAGAAGG GGACCAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss390637196	MGP_WTSI_14_29318053	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260883724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390637196	MGP_WTSI_14_29318053	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28226824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	within coordinates
Rr489628	regulatory region 489628	107 bp distal
Rr489629	regulatory region 489629	190 bp proximal
Rr489630	regulatory region 489630	380 bp proximal
Tssr124778	transcription start site region 124778	262 bp downstream
Tssr124779	transcription start site region 124779	211 bp downstream
Tssr124780	transcription start site region 124780	178 bp downstream
Tssr124781	transcription start site region 124781	105 bp downstream
Tssr124782	transcription start site region 124782	41 bp downstream
Tssr124783	transcription start site region 124783	596 bp upstream
Tssr124784	transcription start site region 124784	628 bp upstream
Tssr124785	transcription start site region 124785	675 bp upstream
Tssr124786	transcription start site region 124786	739 bp upstream
Tssr124787	transcription start site region 124787	892 bp upstream
Tssr124788	transcription start site region 124788	914 bp upstream
Tssr124789	transcription start site region 124789	950 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	within coordinates