rs260887282 SNP Detail

Summary

• ID
  rs260887282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78716834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAGATTTT TTTTAAAGCC CCGAAGAGGA
  AAGATGAAGA GAAGCAATGT TATCCACCGG CGCCCTTGCT GCCTTTCAGA CAGCGGCCCA
  GAGAAGCTAG AAGCCTCATT GAACAGGGCG TTTGTCTCAT GAAAAAGACC TGTCTTTATT
  Y
  CTTTCAGGAT ATAAAACTTG TGTTTAAATC AATTCAGAGA AGCATTCTGA CTTTAAACAT
  GCGCGAGTGG GGAGAACCCG TTTAATGAAA CAGCATTATT TCATTTTCAA AAAATGATCC
  CGGCAGTAGC TGCAAGTTAA GATTCTTCAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757670	CHEV_11_78639510	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260887282					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78716834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	421 bp proximal
D11Bhm79	DNA segment, Chr 11, Boehm 79	1430 bp distal
Gm23219	predicted gene, 23219	1535 bp downstream
Lyrm9	LYR motif containing 9	587 bp upstream
Tssr103332	transcription start site region 103332	567 bp upstream