rs260894042 SNP Detail

Summary

• ID
  rs260894042
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55419037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tatcctgca tatcaaatat gtagtttatg
  attacagtta tgaagtagca ctgaaataat tttatggtta ggggatcacc acaacgtgag
  gcccctaaag ggtcatagca gtagggagtt tgagaaccac tgATATACTT gaatatgagg
  K
  caaatatcct taattctagc agttggaatg aggagacagg aggatcttga gttcaggtta
  gcctgagtaa cacagctaga tcctAATGAG AGAGATGGAA GGGGAAGAAA CAGAGAGGCA
  GAAAACAGAG CCTGCTGCCC AGAGTGAGGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319728265	CHEV_1_55436722	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260894042					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55419037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi265	CpG island 265	1895 bp proximal
Gm8531	predicted gene 8531	1317 bp downstream
Rr371308	regulatory region 371308	1186 bp downstream