rs260894065 SNP Detail

Summary

• ID
  rs260894065
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69838697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGTGGG GTGATTATAC
  ATGAAGCCGC TATAGACGCC GTGCATGGTG CTTTCTGTGA AGCCAGGTCT TCATTTTTCT
  TGGGGAAATC CTTAGCGGGA GACCTCTGCA CATTGAGCTT ATCTTTTCCA TTTTACCTTC
  CCACCTGCAA TGTCCCCAGT GCCCGGCATC CTTGCGGTCC TTTTGGCTTT AACTATTTTT
  W
  AAAAATATTT ATTTATCTAT TATTACATGT AAGTACACTG TAGCTGTCTT CAGACACTCC
  AGAAGAGGGC GTCAGGTCTC ATTACGGATG GTTGTGAGCT ACCATGTGGT TGCTGGGATT
  TGAACTCAGG ACCTATGGAA GAGCAGTCAG CTCTCTTAAC TGCTGAGCCA TCTCACCAGC
  GGATTTAGCT ATTAAAATAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386395852	MGP_WTSI_12_70892910	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260894065					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386395852	MGP_WTSI_12_70892910	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69838697 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	656 bp upstream
Cpgi4702	CpG island 4702	523 bp distal
Rr257091	regulatory region 257091	within coordinates
Rr265514	regulatory region 265514	96 bp distal
Tssr116527	transcription start site region 116527	1650 bp upstream
Tssr116528	transcription start site region 116528	1647 bp upstream
Tssr116529	transcription start site region 116529	1625 bp upstream
Tssr116530	transcription start site region 116530	1292 bp upstream
Tssr116531	transcription start site region 116531	1188 bp upstream
Tssr116532	transcription start site region 116532	630 bp upstream
Tssr116533	transcription start site region 116533	628 bp upstream
Tssr116534	transcription start site region 116534	600 bp upstream
Tssr116535	transcription start site region 116535	585 bp upstream
Tssr116536	transcription start site region 116536	559 bp upstream