rs260897948 SNP Detail

Summary

• ID
  rs260897948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24022964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTGCTA GCCGGTGAGA
  GCATCAGTTT TCTTCAGGGA TTCAGATTCT AAGATGCTAT CCATATTCCA TTAGATAGTT
  CAACACCTAT GAACACACAG ACAACACTAC GTGACTCAGT AGGGAGGAGG AGGAGGAGGA
  GGAGGAGGAG GAGGAGGAGG AGGAGGAGGA GAAGCAATGA AGAAGCATGA ACTTGAGAGG
  R
  AAAAGTGACA GTGGGGAATG GGAGGAATTT GTTGGCAAAA ATGAGTGAGG TCTGATCACA
  ATGCATCATG TGCATGTATA AAAGTTTTAA GCGGTTACTT AAGTGAGTTA GAAAACTTGC
  CATTGTACAT GGTAACATGT GCAAATTGAG ATGTAGGTAC GAGCATTGTT TTATGTAGTT
  TATCAACAAA CATAGAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292296	CHEV_13_23930850	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260897948					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24022964 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	582 bp downstream
Rr475960	regulatory region 475960	457 bp proximal
Rr475961	regulatory region 475961	540 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	453 bp upstream
Tssr4011	transcription start site region 4011	644 bp upstream
Tssr4012	transcription start site region 4012	742 bp upstream
Tssr118875	transcription start site region 118875	420 bp upstream
Tssr118876	transcription start site region 118876	464 bp upstream
Tssr118877	transcription start site region 118877	596 bp upstream
Tssr118878	transcription start site region 118878	617 bp upstream