rs260899615 SNP Detail

Summary

• ID
  rs260899615
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACAGGCA GTCTTGCACT
  ATATACTAAG GAAAGGTTGA AAAAATATAT AGCCAGCGCG ATCTTAAGCT TATGAAATAC
  GTGATCTTTA TAAAATAAGG GAGGAACCGA ACAATACTGG GGGAGGGGAG CGGTGTGTGT
  GTATGTCTTT CCTCTCCTAT TCTTGCAAAC TTTTCATCCA ATCGGAAACT AGAAGGATGC
  S
  GCTTGTGCAT TCTGGCTCAC TAGCCGACAT CCCGGTCCCC CGCCGTCACA TGCTGTTATT
  GAACTTGGGA AATATCCCAG TCCGGAGTGC ACAAGCCTCT TCCAGACCCA CCTCCCGGCC
  GTAGCCGGGT CACAGGAAAG CCCAGCGTCG TTGTGATCCG GGATTTTCCA ATTTTCCCAG
  AGGATTCGCA TCCGGTTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359647234	MGP_WTSI_3_127493448	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260899615					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359647234	MGP_WTSI_3_127493448	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	402 bp distal
Cpgi13801	CpG island 13801	108 bp proximal
Gm56817	predicted gene, 56817	273 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	608 bp distal
Rr584861	regulatory region 584861	711 bp distal
Rr584862	regulatory region 584862	284 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	285 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1328 bp downstream
Tssr31595	transcription start site region 31595	1316 bp downstream
Tssr31596	transcription start site region 31596	1283 bp downstream
Tssr31597	transcription start site region 31597	1243 bp downstream
Tssr31598	transcription start site region 31598	1220 bp downstream
Tssr31599	transcription start site region 31599	721 bp downstream
Tssr31600	transcription start site region 31600	653 bp downstream
Tssr31601	transcription start site region 31601	601 bp downstream
Tssr31602	transcription start site region 31602	547 bp downstream
Tssr31603	transcription start site region 31603	529 bp downstream
Tssr31604	transcription start site region 31604	405 bp downstream
Tssr31605	transcription start site region 31605	72 bp upstream
Tssr31606	transcription start site region 31606	270 bp upstream
Tssr31607	transcription start site region 31607	508 bp upstream
Tssr31608	transcription start site region 31608	576 bp upstream
Tssr31609	transcription start site region 31609	627 bp upstream
Tssr31610	transcription start site region 31610	736 bp upstream
Tssr31611	transcription start site region 31611	844 bp upstream
Tssr35598	transcription start site region 35598	772 bp upstream
Tssr35599	transcription start site region 35599	690 bp upstream
Tssr35600	transcription start site region 35600	662 bp upstream
Tssr35601	transcription start site region 35601	629 bp upstream
Tssr35602	transcription start site region 35602	312 bp upstream