rs260903874 SNP Detail

Summary

• ID
  rs260903874
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131646287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGGGGTG ACGGTGTCAC ATTTCTGGCT
  TCTACCCCCA TCCATTCAGG CTCCTCCCAG TTCAGAAGGG AAAGCGGGTG TCTAGGTCAC
  ACAGAGGCCA GGGCAGAATC AAATCAGGTC CAGACTGCCT GGGGATTATC ACTGTCACCA
  M
  CCAGAGGCCT CTGGCCAGCC ACACATCTGC AGAGACAGGA TGAACCCCCA CCCCCAGCCC
  CCAGCCTGGG AGGTCCCTCT GCAGGGGAGG CCTGTGGGAA GGGAGGCCTG CCTCCCCGTC
  CTGGTTTCCT ATCTTCCTGC TTGTTACACT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329091	CHEV_4_131474891	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260903874					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131646287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	735 bp proximal
Gm12992	predicted gene 12992	within coordinates
Gm50475	predicted gene, 50475	1840 bp downstream
Rr85750	regulatory region 85750	1687 bp distal
Rr85751	regulatory region 85751	1087 bp distal
Rr100128	regulatory region 100128	within coordinates
Tssr39357	transcription start site region 39357	1592 bp upstream
Tssr43616	transcription start site region 43616	1726 bp downstream