rs260904092 SNP Detail

Summary

• ID
  rs260904092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108215570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTCGAG GCCAGCCTGG
  TCTACAATGT GAGTTCCAGG ACAGCCAGGG ATATACAGAG AAACCCTGTC TAAAAAAGAC
  AAAAAAAAAA AAAAAAAAAA AAAGTGGAGT GGAATGTCAT AGAGGGGACA TGAGGGGCTG
  GGTTTTCTGG ACTAAGACCA AACTGCACTG GGGGCAGGAA TCTAGGACCA CTAGAAGCAC
  R
  TGTTCTGAGA GGAGCTAGGT TAGAGTCTGG AGCAGGGAGT CCTGCACTGC TGTCCACCCT
  TACAAAAACA ACCAAAAGAA ATTGCCTTTG ATAGCGCTGT TAGTGCTACT AAAAAAAAGT
  CAGGCATGGG TGGTACAAGC CTTTAGTACC AGCACTCGGG ATGAAAGCAA AGAGACAGGT
  AAATCTCTTG AGTTCTAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864943	MGP_WTSI_9_108240702	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260904092					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864943	MGP_WTSI_9_108240702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108215570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	723 bp proximal
Gm37401	predicted gene, 37401	98 bp upstream
Gm57050	predicted gene, 57050	441 bp downstream
Gpx1	glutathione peroxidase 1	709 bp upstream
Rhoa	ras homolog family member A	428 bp downstream
Rr383883	regulatory region 383883	within coordinates
Rr686784	regulatory region 686784	109 bp distal
Rr686785	regulatory region 686785	within coordinates
Rr686786	regulatory region 686786	1753 bp proximal
Tssr3010	transcription start site region 3010	1371 bp upstream
Tssr87086	transcription start site region 87086	1540 bp downstream
Tssr87087	transcription start site region 87087	1072 bp downstream
Tssr87088	transcription start site region 87088	890 bp downstream
Tssr87089	transcription start site region 87089	830 bp downstream
Tssr87090	transcription start site region 87090	677 bp upstream
Tssr87091	transcription start site region 87091	702 bp upstream
Tssr87092	transcription start site region 87092	850 bp upstream
Tssr87093	transcription start site region 87093	872 bp upstream
Tssr87094	transcription start site region 87094	896 bp upstream
Tssr87095	transcription start site region 87095	917 bp upstream
Tssr87096	transcription start site region 87096	937 bp upstream
Tssr87097	transcription start site region 87097	1405 bp upstream
Tssr87098	transcription start site region 87098	1557 bp upstream
Tssr87099	transcription start site region 87099	1927 bp upstream
Tssr91519	transcription start site region 91519	1505 bp downstream
Tssr91520	transcription start site region 91520	1550 bp downstream
Tssr91521	transcription start site region 91521	1697 bp downstream
Tssr91522	transcription start site region 91522	1755 bp downstream
Tssr91523	transcription start site region 91523	1948 bp downstream