rs260904114 SNP Detail

Summary

• ID
  rs260904114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148489684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC CGCCCCCGTC TGCGCTTGTT
  Y
  CGTTCGTCAC AACGGAGCCC TCTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321718356	CHEV_5_149364450	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260904114					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148489684 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	343 bp downstream
Cpgi17075	CpG island 17075	1249 bp distal
Cpgi17076	CpG island 17076	within coordinates
Gm72666	predicted gene, 72666	967 bp upstream
Gm72684	predicted gene, 72684	297 bp downstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	223 bp distal
Rr625195	regulatory region 625195	within coordinates
Rr625196	regulatory region 625196	57 bp distal
Rr625197	regulatory region 625197	477 bp proximal
Rr625198	regulatory region 625198	1041 bp proximal
Rr625199	regulatory region 625199	1320 bp proximal
Tssr49862	transcription start site region 49862	481 bp downstream
Tssr54570	transcription start site region 54570	1193 bp upstream
Tssr54571	transcription start site region 54571	751 bp upstream
Tssr54572	transcription start site region 54572	653 bp upstream
Tssr54573	transcription start site region 54573	601 bp upstream
Tssr54574	transcription start site region 54574	446 bp upstream
Tssr54575	transcription start site region 54575	357 bp upstream
Tssr54576	transcription start site region 54576	186 bp upstream
Tssr54577	transcription start site region 54577	31 bp upstream
Tssr54578	transcription start site region 54578	982 bp downstream
Tssr54579	transcription start site region 54579	1119 bp downstream
Ubl3	ubiquitin-like 3	85 bp upstream