rs260904663 SNP Detail

Summary

• ID
  rs260904663
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117162218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAGAGAGAGA GAGCCGACAG
  A
  AGAGGAGTAA AGACCTATGG CCCTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324842597	CHEV_14_117324028	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260904663					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117162218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	363 bp proximal
Gpc6	glypican 6	509 bp upstream
Tssr127141	transcription start site region 127141	399 bp upstream
Tssr127142	transcription start site region 127142	453 bp upstream
Tssr127143	transcription start site region 127143	485 bp upstream
Tssr127144	transcription start site region 127144	573 bp upstream
Tssr127145	transcription start site region 127145	699 bp upstream
Tssr127146	transcription start site region 127146	710 bp upstream
Tssr127147	transcription start site region 127147	739 bp upstream
Tssr127148	transcription start site region 127148	752 bp upstream
Tssr127149	transcription start site region 127149	966 bp upstream
Tssr127150	transcription start site region 127150	997 bp upstream