rs260911967 SNP Detail

Summary

• ID
  rs260911967
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134025154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCCTCT CCACTCCCAG
  CAGCTTTGCC CTGGGCTGGT CCACTGATGA AGCCCCAAGG AGTTTGGGAG TGGAGTTCAA
  GATCCCTCAA AGAAGGGTGA CTTGGTATCA GGGTCAATCC ATGGGTAATA TTTGGGGCAG
  ACATGGTATA GGGAAAGGGC TGGCCATGTC AGAATTGGCT CCTTTTCCCT CTTCAATGAT
  K
  TCTTATCCCT GCCCTCCTGG AATCAAGGAA GTTCATGACA AGATTGCTAG AACTCAAGTT
  AGTAGAGCCC AGTATAAACA CAGCCTGTTA CACAAACACT TCAGGTACTC AGAGGCCTGG
  AATTCATAAA CATACCTGGA TCCAAGTACA TTCTGAACTG ACTCTAGAAG CGGGAGTCAG
  TGAGTCCTGT ATCCTTGCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351511080	MGP_WTSI_1_135993993	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260911967					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351511080	MGP_WTSI_1_135993993	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134025154 () rs orientation: forward

Symbol	Name	Function Class
Gm38140	predicted gene, 38140	within coordinates
Gm70605	predicted gene, 70605	1996 bp downstream
Gm70608	predicted gene, 70608	642 bp downstream
Gm70612	predicted gene, 70612	1991 bp upstream
Rr372065	regulatory region 372065	62 bp upstream
Rr418811	regulatory region 418811	1864 bp proximal
Tssr13772	transcription start site region 13772	1704 bp downstream
Tssr13773	transcription start site region 13773	1722 bp downstream
Tssr13774	transcription start site region 13774	1733 bp downstream
Tssr13775	transcription start site region 13775	1777 bp downstream
Tssr13776	transcription start site region 13776	1838 bp downstream