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rs260912869 SNP Detail
Summary
  • ID
    rs260912869
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:31895276 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCCAAGTG GAGTGATATG
    GTCATACGGT TCAGCCTTCC TAAGCCCCAC TTTCTTGGTT TGTACATCGG AGGGACGTAG
    GAGACTTAGA GGTGCCTGTG CTCACAGATA AGCACCAAGG GAACCTGGAG TTTTAGCATC
    CAGGGTTCCT TCAAGGGAAA GCAGAAGGCT GGGATCAGAT GTATACTCCA GCCTGGTGAC
    Y
    TTTGCGGCAT CTGTGTGGCT GGAAACCACA CTAGACCCTT CCCCAGACCC TTATCATAAA
    CTTCTTTCTA AATCAATCTA TAGACCTCAT CATTATGGAA GGTGTTATAC ATACTTTAAA
    AAAAGATTTA CTATATTTTA TGTATATGAG TACGCTGTTG CTGTTCTCAG ACACACCAGA
    AGAAGGCATC ACAACCATTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398015877 MGP_WTSI_17_31813247 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C T C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C T T C C C T C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260912869 SNP C C C C C T C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C T T C C C T C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss398015877 MGP_WTSI_17_31813247 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:31895276 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cryaa crystallin, alpha A 1629 bp upstream
Gm50222 predicted gene, 50222 487 bp downstream
Tssr143680 transcription start site region 143680 1622 bp upstream
Tssr147305 transcription start site region 147305 1807 bp downstream
Tssr147306 transcription start site region 147306 1829 bp downstream
Tssr147307 transcription start site region 147307 1879 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory