rs260913611 SNP Detail

Summary

• ID
  rs260913611
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9672913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTAGATA TTCCTAGTTT
  AAAGAACAGA TTTCTTTCCT ACACTGGGCC TACTTGGATT ACAGAGCATA ACATATTAAT
  CTTTCTGTCT CAACTTGTAT AATCACCCCA GACACATTTT GAGTGTGTAT GAACAACACT
  GCTCAGGGGG CACTCTGTCT TATTCAGTGT CACTGATGCT ATGGAACTTA ATTCAAATCC
  S
  GCTATATCCT GTTGCCACAC AAAGCGGGCT TTTCAGCAGG CAGCAGTAAT GAGTGTGGGC
  ACAGTCCAGA TTCCAACAAG CAGCTGTCAA AAACAATCAC CTAAATGACC ATTTGCTCAA
  GTCTCACACC GAGAGAGAGC CAGTCATACT TCAGGGTGGT CTAGGAAAGA AACATTCCCA
  CATCTACTGC GGGGCAACGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651678	CHEV_3_9607853	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260913611					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9672913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	741 bp proximal
Gm56803	predicted gene, 56803	910 bp upstream
Rr78141	regulatory region 78141	within coordinates
Tssr28346	transcription start site region 28346	950 bp upstream
Tssr28347	transcription start site region 28347	973 bp upstream
Zfp704	zinc finger protein 704	within coordinates