rs260916912 SNP Detail

Summary

• ID
  rs260916912
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101048120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTCTGC TCCAAAAACA
  ATTTGAAGTT TTGGCCAATA TGTATTTTCT TCCAAGAGTG AAATTCAGAG AATGCAAACC
  CTTAAGAAAG GAATATTTTA AAACGTGAAA CCGTTATTTC AAACAACCTT ATCTTTGAAC
  ACTGAAGACT GTTTCAATAG ACTTGAGGTG AAAGCAGAAG GACTTGTTCA AGTGTTAAAA
  R
  ATACCTCTCC CCACCAGCCA ACTCAACCAA CTAAGGACCA TACGCTTAAA CAATCAGAAA
  AGCTTGCAAT AAAATGTTCC AAAGGTTCAC GAGTTCCCAC AGAAGACCTA CAAAGTCTTT
  CTTTCTTAGC CAGGTGTGGC AGCACTTTAA TCCCAGCACT GGAGAGGCAG AGGAAGGCAA
  GCTTTGAGTT CAAGGCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387112782	MGP_WTSI_12_102320071	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260916912					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387112782	MGP_WTSI_12_102320071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101048120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	574 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	590 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	1720 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	351 bp upstream
Tssr114723	transcription start site region 114723	1078 bp upstream
Tssr114724	transcription start site region 114724	1851 bp upstream
Tssr114725	transcription start site region 114725	1895 bp upstream
Tssr114726	transcription start site region 114726	1945 bp upstream
Tssr117352	transcription start site region 117352	1588 bp downstream
Tssr117353	transcription start site region 117353	1714 bp downstream
Tssr117354	transcription start site region 117354	1792 bp downstream