rs260917518 SNP Detail

Summary

• ID
  rs260917518
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38411262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGAGAGC CGGCTCGAGC
  GAGCGCCGAG GGCCAGAACA GTGGGGATGG CGGAGCCGCG CAGAGTCGCG TTCATTAGCC
  TGTCACCGGT GAGGCGACGC GAGGCCGACT TCGCGGGCGC CGAGCGCGAG CCCCCCCGAC
  TGGAGCCGCA GCCGTACCGC GAGCCGGCCC GGGCGGAGCC GGCCCCCCGC GCTGACGCGC
  W
  GCCCCCGGCG CGCGACAAGC CGCTCCCCCA GCGCGAGGTC AGCCGCGCCG AGCCGCCCAT
  GGCGCTGCAG CGCGAGCCCC CGCGGCCCGA GCCGCCGCCG CCGCCGCTGC CCCTGCAGAC
  TCCCCCTCCG CGGGAGTCGG CTTCCCGGGC GGAGCCGCCG CCGCGACCGC CGAAGGAGAC
  GGTTCGCCTG GAGCTGGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss368008563	MGP_WTSI_6_38384327	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260917518					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368008563	MGP_WTSI_6_38384327	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38411262 () rs orientation: forward

Symbol	Name	Function Class
1700021L22Rik	RIKEN cDNA 1700021L22 gene	27 bp upstream
Cpgi17310	CpG island 17310	within coordinates
Gm53284	predicted gene, 53284	1491 bp upstream
Rr368055	regulatory region 368055	372 bp downstream
Rr628818	regulatory region 628818	659 bp distal
Rr628819	regulatory region 628819	144 bp distal
Tssr55646	transcription start site region 55646	464 bp downstream
Tssr55647	transcription start site region 55647	445 bp downstream
Tssr55648	transcription start site region 55648	362 bp downstream
Tssr55649	transcription start site region 55649	9 bp upstream
Tssr60412	transcription start site region 60412	666 bp upstream
Tssr60413	transcription start site region 60413	595 bp upstream
Ubn2	ubinuclein 2	within coordinates