rs260933529 SNP Detail

Summary

• ID
  rs260933529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126860960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGTTTA AAAAAAAAGC
  CTTGAAAAAC ATTACTCAGT GGATAGTATT GTTCTCCATC TGAAGAAAAT GAATCACAAC
  TAAATTAAAA ATAAAAAAAG TTTCAAGACA AACTTTTAAA CGGCTTACAA CTCCTGTGTA
  GACAAGGCTT TACCTAGGGC AGGCAAGGCT GGCTGGGTAC ATCCTAAGGA CAAAACTTGT
  Y
  ACTCTTCCAC GTTACTAACT GCAGGTAAAG AATGCTAGAC TATAACACAT CCGTGGCTAT
  CAGAACACAT TCCCCCAACT TCAAGACGAC AACCCCACTT CTTCTAAGGT GAAGAGAGCA
  CCATGTCCAC TTTGGGGCTT GATAACGGTC AAGGGGGAGG GGAGTGGAGG CAGGAAGATG
  AATTGGCTCC GGGGTTCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363166579	MGP_WTSI_4_126644411	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260933529					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363166579	MGP_WTSI_4_126644411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126860960 () rs orientation: forward

Symbol	Name	Function Class
4933424C08Rik	RIKEN cDNA 4933424C08 gene	1033 bp upstream
Cpgi14832	CpG island 14832	58 bp proximal
Gm68857	predicted gene, 68857	1074 bp downstream
Rr398497	regulatory region 398497	898 bp upstream
Rr599780	regulatory region 599780	within coordinates
Rr599781	regulatory region 599781	958 bp proximal
Rr599782	regulatory region 599782	1044 bp proximal
Tssr39026	transcription start site region 39026	1260 bp upstream
Tssr43405	transcription start site region 43405	825 bp downstream
Tssr43406	transcription start site region 43406	883 bp downstream
Tssr43407	transcription start site region 43407	957 bp downstream
Tssr43408	transcription start site region 43408	992 bp downstream
Tssr43409	transcription start site region 43409	1013 bp downstream
Tssr43410	transcription start site region 43410	1033 bp downstream
Tssr43411	transcription start site region 43411	1676 bp downstream
Zmym4	zinc finger, MYM-type 4	within coordinates