rs260934733 SNP Detail

Summary

• ID
  rs260934733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25112466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACACCCTT GGGAAATCAA GAGCAGGAAG
  GCGGTGCTGG TCAGTTTAGT ACCAGATTGG ACCAGGTCTT TACGGGAATG TGGGAGGTAA
  AACTGGCCAA ACAAAAGAAA CCACACTCCA GAGAAAGGAA CAAATGACTG ACACCTTGGC
  R
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtatg tatgCTTGAC TCCTCCCCCA
  CTGTGGGGGG TTTCATTCTC TAAGCTTTTT TCTCACTTGA ATTTCCGTGT ACCTTTTGGC
  TGTTTAGAGC AAAACCGAGG CACTGCAGGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121687	CHEV_7_26198060	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260934733					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25112466 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	155 bp upstream
Tssr2143	transcription start site region 2143	239 bp upstream
Tssr2144	transcription start site region 2144	91 bp upstream
Tssr2145	transcription start site region 2145	67 bp upstream
Tssr2146	transcription start site region 2146	54 bp upstream
Tssr2147	transcription start site region 2147	9 bp upstream
Tssr71243	transcription start site region 71243	225 bp upstream
Tssr71244	transcription start site region 71244	200 bp upstream
Tssr71245	transcription start site region 71245	185 bp upstream
Tssr71246	transcription start site region 71246	156 bp upstream
Tssr71247	transcription start site region 71247	128 bp upstream