rs260940255 SNP Detail

Summary

• ID
  rs260940255
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30738132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACGCCCC CAGCCCCTCA
  CTGGAGGATT CTAGGTAGGG GCTCTACCAC TGAGCCATGC CTTCAGCATC ACTAATCATT
  AACTGAAGAA ATTACAAGAA GTACTCTAAA TTATATTATA CTCCAAGAAA AAGTATAATT
  ATTATTTAGA AAAAAAAAAT CTAAAGAGAT CCAGACCTGA ACAGAAGCTA TGGCTGAGCA
  S
  TCACCGGAAG TGTTTATAAA CATCTAGTGC TCAACTTTTA AAAATGGGTC AATGAAAAAG
  AGATTTTTGT TTTTAAGTCA ATGGGATTGG GTGTAGATAG ACACAGGCAG CACATTCTGC
  AATGCCAACA CTCCAGAGGC TGAGGCAGAA GGATTGCCCT GAGTTTTAGG CTACCCTGGG
  CTACAAAATA GTAATGTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370920948	MGP_WTSI_7_31823726	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260940255					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370920948	MGP_WTSI_7_31823726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30738132 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	1394 bp downstream
Mir7050	microRNA 7050	1551 bp downstream
Rr368303	regulatory region 368303	1763 bp upstream
Tssr65831	transcription start site region 65831	1699 bp downstream
Tssr65832	transcription start site region 65832	1290 bp downstream
Tssr65833	transcription start site region 65833	851 bp downstream
Tssr65834	transcription start site region 65834	820 bp downstream
Tssr71892	transcription start site region 71892	1613 bp upstream
Tssr71893	transcription start site region 71893	840 bp upstream
Tssr71894	transcription start site region 71894	817 bp upstream
Tssr71895	transcription start site region 71895	788 bp upstream
Tssr71896	transcription start site region 71896	758 bp upstream
Tssr71897	transcription start site region 71897	352 bp downstream
Tssr71898	transcription start site region 71898	1501 bp downstream