rs260945516 SNP Detail

Summary

• ID
  rs260945516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44127268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTTCTCTGCT GTTTCCTCTG
  Y
  CATCTTTCTC AGTTTTGTTC TTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322198922	CHEV_7_51733214	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260945516					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44127268 () rs orientation: forward

Symbol	Name	Function Class
Tssr2222	transcription start site region 2222	1490 bp downstream
Tssr2223	transcription start site region 2223	1311 bp downstream
Tssr2224	transcription start site region 2224	465 bp downstream
Tssr2225	transcription start site region 2225	425 bp downstream
Tssr2226	transcription start site region 2226	94 bp upstream
Tssr2227	transcription start site region 2227	1167 bp upstream
Tssr66197	transcription start site region 66197	1912 bp downstream
Tssr66198	transcription start site region 66198	1881 bp downstream
Tssr66199	transcription start site region 66199	1871 bp downstream
Tssr66200	transcription start site region 66200	1848 bp downstream
Tssr66201	transcription start site region 66201	1830 bp downstream
Tssr66202	transcription start site region 66202	1815 bp downstream
Tssr66203	transcription start site region 66203	1793 bp downstream
Tssr66204	transcription start site region 66204	1737 bp downstream
Tssr66205	transcription start site region 66205	1713 bp downstream
Tssr66206	transcription start site region 66206	1700 bp downstream
Tssr66207	transcription start site region 66207	1680 bp downstream
Tssr66208	transcription start site region 66208	1666 bp downstream
Tssr66209	transcription start site region 66209	1635 bp downstream
Tssr66210	transcription start site region 66210	1602 bp downstream
Tssr66211	transcription start site region 66211	1562 bp downstream
Tssr66212	transcription start site region 66212	1519 bp downstream
Tssr66213	transcription start site region 66213	1504 bp downstream
Tssr66214	transcription start site region 66214	1472 bp downstream
Tssr66215	transcription start site region 66215	1442 bp downstream
Tssr66216	transcription start site region 66216	1395 bp downstream
Tssr66217	transcription start site region 66217	1323 bp downstream
Tssr66218	transcription start site region 66218	1269 bp downstream
Tssr66219	transcription start site region 66219	1227 bp downstream
Tssr66220	transcription start site region 66220	1193 bp downstream
Tssr66221	transcription start site region 66221	1174 bp downstream
Tssr66222	transcription start site region 66222	1121 bp downstream
Tssr66223	transcription start site region 66223	1054 bp downstream
Tssr66224	transcription start site region 66224	1031 bp downstream
Tssr66225	transcription start site region 66225	1011 bp downstream
Tssr66226	transcription start site region 66226	998 bp downstream
Tssr66227	transcription start site region 66227	957 bp downstream
Tssr66228	transcription start site region 66228	954 bp downstream
Tssr66229	transcription start site region 66229	941 bp downstream
Tssr66230	transcription start site region 66230	921 bp downstream
Tssr66231	transcription start site region 66231	886 bp downstream
Tssr66232	transcription start site region 66232	874 bp downstream
Tssr66233	transcription start site region 66233	852 bp downstream
Tssr66234	transcription start site region 66234	822 bp downstream
Tssr66235	transcription start site region 66235	802 bp downstream
Tssr66236	transcription start site region 66236	775 bp downstream
Tssr66237	transcription start site region 66237	754 bp downstream
Tssr66238	transcription start site region 66238	735 bp downstream
Tssr66239	transcription start site region 66239	684 bp downstream
Tssr66240	transcription start site region 66240	603 bp downstream
Tssr66241	transcription start site region 66241	591 bp downstream
Tssr66242	transcription start site region 66242	511 bp downstream
Tssr66243	transcription start site region 66243	497 bp downstream
Tssr66244	transcription start site region 66244	446 bp downstream
Tssr66245	transcription start site region 66245	384 bp downstream
Tssr66246	transcription start site region 66246	356 bp downstream
Tssr66247	transcription start site region 66247	309 bp downstream
Tssr66248	transcription start site region 66248	268 bp downstream
Tssr66249	transcription start site region 66249	245 bp downstream
Tssr66250	transcription start site region 66250	226 bp downstream
Tssr66251	transcription start site region 66251	201 bp downstream
Tssr66252	transcription start site region 66252	170 bp downstream
Tssr66253	transcription start site region 66253	142 bp downstream
Tssr66254	transcription start site region 66254	94 bp downstream
Tssr66255	transcription start site region 66255	67 bp downstream
Tssr66256	transcription start site region 66256	18 bp downstream
Tssr66257	transcription start site region 66257	7 bp downstream
Tssr66258	transcription start site region 66258	16 bp upstream
Tssr66259	transcription start site region 66259	45 bp upstream
Tssr66260	transcription start site region 66260	161 bp upstream
Tssr66261	transcription start site region 66261	187 bp upstream
Tssr66262	transcription start site region 66262	204 bp upstream
Tssr66263	transcription start site region 66263	210 bp upstream
Tssr66264	transcription start site region 66264	220 bp upstream
Tssr66265	transcription start site region 66265	249 bp upstream
Tssr66266	transcription start site region 66266	292 bp upstream
Tssr66267	transcription start site region 66267	320 bp upstream
Tssr66268	transcription start site region 66268	349 bp upstream
Tssr66269	transcription start site region 66269	369 bp upstream
Tssr66270	transcription start site region 66270	420 bp upstream
Tssr66271	transcription start site region 66271	438 bp upstream
Tssr66272	transcription start site region 66272	504 bp upstream
Tssr66273	transcription start site region 66273	516 bp upstream
Tssr66274	transcription start site region 66274	531 bp upstream
Tssr66275	transcription start site region 66275	539 bp upstream
Tssr66276	transcription start site region 66276	568 bp upstream
Tssr66277	transcription start site region 66277	576 bp upstream
Tssr66278	transcription start site region 66278	608 bp upstream
Tssr66279	transcription start site region 66279	655 bp upstream
Tssr66280	transcription start site region 66280	694 bp upstream
Tssr66281	transcription start site region 66281	725 bp upstream
Tssr66282	transcription start site region 66282	751 bp upstream
Tssr66283	transcription start site region 66283	765 bp upstream
Tssr66284	transcription start site region 66284	782 bp upstream
Tssr66285	transcription start site region 66285	797 bp upstream
Tssr66286	transcription start site region 66286	834 bp upstream
Tssr66287	transcription start site region 66287	852 bp upstream
Tssr66288	transcription start site region 66288	888 bp upstream
Tssr66289	transcription start site region 66289	936 bp upstream
Tssr66290	transcription start site region 66290	997 bp upstream
Tssr66291	transcription start site region 66291	1026 bp upstream
Tssr66292	transcription start site region 66292	1064 bp upstream
Tssr66293	transcription start site region 66293	1082 bp upstream
Tssr66294	transcription start site region 66294	1103 bp upstream
Tssr66295	transcription start site region 66295	1388 bp upstream
Tssr66296	transcription start site region 66296	1521 bp upstream
Tssr66297	transcription start site region 66297	1564 bp upstream
Tssr66298	transcription start site region 66298	1589 bp upstream
Tssr66299	transcription start site region 66299	1658 bp upstream
Tssr66300	transcription start site region 66300	1665 bp upstream
Tssr66301	transcription start site region 66301	1689 bp upstream
Tssr66302	transcription start site region 66302	1703 bp upstream
Tssr66303	transcription start site region 66303	1744 bp upstream
Tssr66304	transcription start site region 66304	1752 bp upstream
Tssr66305	transcription start site region 66305	1762 bp upstream
Tssr66306	transcription start site region 66306	1796 bp upstream
Tssr66307	transcription start site region 66307	1853 bp upstream
Tssr66308	transcription start site region 66308	1906 bp upstream
Tssr66309	transcription start site region 66309	1927 bp upstream
Tssr66310	transcription start site region 66310	1965 bp upstream
Tssr72199	transcription start site region 72199	361 bp upstream
Tssr72200	transcription start site region 72200	585 bp downstream
Tssr72201	transcription start site region 72201	1086 bp downstream
Tssr72202	transcription start site region 72202	1949 bp downstream