rs260967184 SNP Detail

Summary

• ID
  rs260967184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121913203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTGATTC CCCCACCCCC ACCCCCTCAA GGGGACAACA
  TTCAAGACAG GGTTTCTCTG TTTAGCCCTT GCTGTTCTGG AACTTGCTTT GTTGACCAGG
  Y
  TGGCCTCGAA CTCAGAGATC CACCTGTCTC TGCCTCCCAA GTGCTGGGAT TAAAGGTGAG
  CACTGCTCAG CTTGTTTTTG TTTTTATTAC AATTTCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320908554	CHEV_3_121822472	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260967184					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121913203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			within coordinates
Rr584235	regulatory region 584235			396 bp distal
Rr584236	regulatory region 584236			360 bp proximal