rs260968027 SNP Detail

Summary

• ID
  rs260968027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122827796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGCTGAG CAGTGGAGTT
  ATCAGTAGAA TTGCTTTCTG GTAGACTTAG TTTGTACACG TAGTCCCAAT AATCATATGA
  CCTGGAGGAA TCAAAATTAT ATCTACATAT ACTGCGATTG TCCATAATGA ACAGATCACG
  GTATACAAAT ACGGGCACAC ACATCACAAA GGCTACCACC CAGACACATC CACAGATGGC
  R
  AAGGCGGTTC TCACGTTTCG ATGATTCTGG CACCAGATTG GCTTATGTAC TATCAGACAT
  CGGTCCAGGC TAATGGCAGT AAGCAGGAAG ACACTGGCAA ACATGTTGAG AATAATGATG
  GATGGGATAA GTTTGCACAG GAACAAGCCA TAGGGCCAGT GTCCTTGGAG AATCAGGTGA
  GCCAAGGAGA AGGGCAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914796	MGP_WTSI_6_122800855	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260968027					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914796	MGP_WTSI_6_122800855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122827796 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	1853 bp proximal
Tssr58711	transcription start site region 58711	328 bp downstream
Tssr58712	transcription start site region 58712	247 bp downstream
Tssr58713	transcription start site region 58713	179 bp downstream
Tssr62979	transcription start site region 62979	1992 bp upstream
Tssr62980	transcription start site region 62980	1976 bp upstream
Tssr62981	transcription start site region 62981	1957 bp upstream
Tssr62982	transcription start site region 62982	1798 bp upstream
Tssr62983	transcription start site region 62983	1340 bp upstream
Tssr62984	transcription start site region 62984	1244 bp upstream
Tssr62985	transcription start site region 62985	1205 bp upstream
Tssr62986	transcription start site region 62986	910 bp upstream
Tssr62987	transcription start site region 62987	784 bp upstream
Tssr62988	transcription start site region 62988	718 bp upstream
Tssr62989	transcription start site region 62989	558 bp upstream
Tssr62990	transcription start site region 62990	505 bp upstream
Tssr62991	transcription start site region 62991	476 bp upstream
Tssr62992	transcription start site region 62992	426 bp upstream
Tssr62993	transcription start site region 62993	333 bp upstream
Tssr62994	transcription start site region 62994	156 bp upstream
Tssr62995	transcription start site region 62995	102 bp upstream
Tssr62996	transcription start site region 62996	within coordinates
Tssr62997	transcription start site region 62997	47 bp downstream
Tssr62998	transcription start site region 62998	102 bp downstream
Tssr62999	transcription start site region 62999	173 bp downstream
Tssr63000	transcription start site region 63000	230 bp downstream
Tssr63001	transcription start site region 63001	253 bp downstream