rs260975577 SNP Detail

Summary

• ID
  rs260975577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4761341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acaggagga ttccaagttc aaggctgaca
  gcttgggcta caatgagacc ctgtctttaa aaagcCTGAG AGTGGAGCAC ATGGTCctaa
  gacccagttt tcctcatctg taaaatggga actaccttgt aaagcaatta tagaattaaa
  Y
  atactctgta taaagatcta gcacatgcct agcacaaagt agctagcaaa tgttaTTTGC
  AAGAAGTACT GGACAAACTG CATGCATTTT AAATTAATAT AACTATTCAT AGGCATTTTC
  ACCTAGATAA AGCAGTCCAT TCAACTCAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874776	CHEV_12_4718147	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260975577					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4761341 () rs orientation: forward

Symbol	Name	Function Class
Gm53750	predicted gene, 53750	within coordinates
Itsn2	intersectin 2	within coordinates
Rr260648	regulatory region 260648	1541 bp distal
Rr260649	regulatory region 260649	1460 bp proximal
Rr263604	regulatory region 263604	1957 bp distal
Tssr112576	transcription start site region 112576	995 bp upstream
Tssr112577	transcription start site region 112577	1014 bp upstream
Tssr115645	transcription start site region 115645	874 bp downstream