rs260981167 SNP Detail

Summary

• ID
  rs260981167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152102045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCGGGG CCGGAGCCCT
  TCAGAGCGAG CGAGCGCCGG GAGGGGGTGG CCGAGGCGGC GGCGGCGGCG GCGCCCCCAC
  GTGGGCCGGG CGCGCGCGTT CGCGGCTGAG GGGGCGGGGA GGCCTGCGGA GGCGCCGGGC
  GCGCGCGCGG GGCTCACGTG ACGGCCACGT GACCGGAGGC CAGGCCGGCT GAGGGCTAGC
  R
  CGGTCCTCCG TGGCGTCCGG AGGGCGGCAG AGGGCTGAGT TTGGCGTCCC GCCTTTCCTT
  CTCCCCTCAG ACGACTCAGA GGAGGAATCC AGGGCGGGGA AGGCTTGCCT CTCCTCCCGT
  TTGCCCGCGG CCTCCCAGTG CGAGGACGAA CCACACGTTC AAAGTCCCGA AGTAGTGATT
  AGCTTCCCCC ACGCCGCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360265593	MGP_WTSI_3_152059372	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260981167					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265593	MGP_WTSI_3_152059372	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152102045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	1646 bp distal
Cpgi13950	CpG island 13950	within coordinates
Gm66519	predicted gene, 66519	1731 bp upstream
Rr77388	regulatory region 77388	within coordinates
Tssr32410	transcription start site region 32410	919 bp downstream
Tssr32411	transcription start site region 32411	349 bp downstream
Tssr32412	transcription start site region 32412	326 bp downstream
Tssr32413	transcription start site region 32413	14 bp downstream
Tssr32414	transcription start site region 32414	256 bp upstream
Zzz3	zinc finger, ZZ domain containing 3	within coordinates