rs260986553 SNP Detail

Summary

• ID
  rs260986553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGTCA AGTACCTGTA
  CTGGGTGGTC TGAAGTCGCC ACCCCACTGA GCCATCTCTG CTAGCTAACC AAAGCTAAGC
  ACTGCAACTT CCCCGTAGTG GGCGGGATGC ACTGAACACT CTGACCTGGC CCCTCCACGG
  GCCAGGCAAG TCCTTGAGGA TCTTTAGCAA TCACACATCC CAGGTCAATA AACTGAAAAC
  R
  GATAGAATGA ACATGATCAG TGAAAAGATA CAGGGAAGGA AAATGATGTA CCTAGTGCCT
  CCCCAAGTCA AAGTCCTCTG CCCCGATAAA AAACACCGAC CTTTAGACCT GCTTTCTGTC
  TGGACTCCAG GCACAGAAAT GATATTTTGT CAAGTAATTC CAGCCCCCAC TCAGCACTTT
  ACAAACATGT TTTACAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357118621	MGP_WTSI_3_17688091	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260986553					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357118621	MGP_WTSI_3_17688091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	960 bp distal
Gm10742	predicted gene 10742	1193 bp upstream
Gm56811	predicted gene, 56811	953 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	1830 bp upstream
Rr573841	regulatory region 573841	1745 bp distal
Rr573842	regulatory region 573842	964 bp distal
Rr573843	regulatory region 573843	463 bp distal
Rr573844	regulatory region 573844	741 bp proximal
Rr573845	regulatory region 573845	1242 bp proximal
Rr573846	regulatory region 573846	1366 bp proximal
Rr573847	regulatory region 573847	1972 bp proximal
Tssr28480	transcription start site region 28480	1636 bp upstream
Tssr28481	transcription start site region 28481	1801 bp upstream
Tssr28482	transcription start site region 28482	1865 bp upstream
Tssr28483	transcription start site region 28483	1960 bp upstream
Tssr32676	transcription start site region 32676	1773 bp upstream
Tssr32677	transcription start site region 32677	1246 bp upstream
Tssr32678	transcription start site region 32678	1516 bp downstream