rs260990073 SNP Detail

Summary

• ID
  rs260990073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34687951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCAGTACC CCGGAGCTCT TGACTCTAGC TGCATATGTA
  TCAAAAGATG GCCTAATCGG CCATCACTGG AAAGAGAGGC CCATTGGACA CGTAAACTTT
  R
  TATGCCCCAG TACAGGGGAA CGCCAGGGCC AAAAAGGGGG AGTGGGTGGG TAGGGGAGTG
  GGGGTGGGTG GGTATGGGGG ACTTTTGGTA TAGCATTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ
ss361143799	MGP_WTSI_4_34635200	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ
rs260990073					SNP	A	A	A	G	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361143799	MGP_WTSI_4_34635200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34687951 () rs orientation: forward

Symbol	Name	Function Class
Cfap206	cilia and flagella associated protein 206	608 bp downstream
Cpgi14121	CpG island 14121	378 bp distal
Rr100808	regulatory region 100808	within coordinates
Rr398199	regulatory region 398199	427 bp downstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	513 bp upstream
Tssr41193	transcription start site region 41193	642 bp upstream
Tssr41194	transcription start site region 41194	609 bp upstream
Tssr41195	transcription start site region 41195	576 bp upstream
Tssr41196	transcription start site region 41196	499 bp upstream
Tssr41197	transcription start site region 41197	487 bp upstream