rs260994694 SNP Detail

Summary

• ID
  rs260994694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76367997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGACCCCC GGCTGACCAG
  GGTCCGGAGC GGAGTCGCTC CGGGCACTCG GGGGTCCCAG GCTCCAGAAC CCGGACGGCT
  TACCTGCTCA CGTCGGCTCG GGGCAGCCGC CGCCCGCGCC GCTCCCAGCA CCGCGCTCCA
  GCCCTCCGAG GCCGCGCCGC CTCCGGGCGG CCGCTCAGTC CCGCAGCCGC CGCCGCCCAG
  Y
  CCGCGCGGCA GCCGCAAGTG GCGAGTCCGC GGGAGTCCCG GCCGTGCCTC CGAGCGCCCC
  GCCTCCCTTT GCCAGCGCCG TGTCCTCGGC CCTGGCGCCC GCCGCTCGCC GCCGCTCCCG
  CTCCTCCCGC TGTTCCACGC TCCTCCCGCT CCTCCACGCT GCTCCGCGCC CTCCTCCTCC
  TCCTCGCGCG CGGCTGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362034877	MGP_WTSI_4_76095664	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260994694					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362034877	MGP_WTSI_4_76095664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76367997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	within coordinates
Gm42303	predicted gene, 42303	1132 bp upstream
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr90206	regulatory region 90206	1997 bp distal
Rr101140	regulatory region 101140	within coordinates
Tssr37647	transcription start site region 37647	1124 bp upstream
Tssr37648	transcription start site region 37648	1693 bp upstream
Tssr42162	transcription start site region 42162	8 bp downstream
Tssr42163	transcription start site region 42163	718 bp downstream
Tssr42164	transcription start site region 42164	830 bp downstream